Open Access Directory - User contributions [en]

Journal open-data policies

2018-07-22T21:43:41Z

Jgautier: /* B */

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html Author Guidelines]
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Figshare
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html Author Guidelines]
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy URL(s): [http://www.int-res.com/journals/guidelines-for-authors/manuscript-formatting-requirements-and-preparation-tips/ Guidelines for authors]
** Policy text: Sequence data: Full sequence information is required when molecular methods are used. The sequences of novel primers must be given. Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained.---Ocean acidification data reporting: When presenting methods and results reporting ocean acidification the 'Guide to best practices for ocean acidification research and data reporting' must be followed. Specifics for reporting ocean acidification data in scientific journals are outlined in Annex 1 of the 2015 addendum.---Unpublished results and submitted articles should be cited as: author's name unpub. data (e.g. N. Smith unpubl. data) in the text only.
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: Some data: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL, GenBank, DDBJ
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy URL(s): [http://www.biomedcentral.com/getpublished/editorial-policies#availability+of+data+and+materials Availability of Data and Materials]
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: All raw data supporting publication.
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Recommended repositories listed at http://www.springernature.com/gp/group/data-policy/repositories
** Types of deposit places: Repository; Journal
** Policy has instructions for where in manuscript to cite data?: Yes: Reference list
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2018-07-22T21:43:08Z

Jgautier: /* A */

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html Author Guidelines]
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Figshare
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html Author Guidelines]
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy URL(s): [http://www.int-res.com/journals/guidelines-for-authors/manuscript-formatting-requirements-and-preparation-tips/ Guidelines for authors]
** Policy text: Sequence data: Full sequence information is required when molecular methods are used. The sequences of novel primers must be given. Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained.---Ocean acidification data reporting: When presenting methods and results reporting ocean acidification the 'Guide to best practices for ocean acidification research and data reporting' must be followed. Specifics for reporting ocean acidification data in scientific journals are outlined in Annex 1 of the 2015 addendum.---Unpublished results and submitted articles should be cited as: author's name unpub. data (e.g. N. Smith unpubl. data) in the text only.
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: Some data: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL, GenBank, DDBJ
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy URL(s): [http://www.biomedcentral.com/getpublished/editorial-policies#availability+of+data+and+materials]
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: All raw data supporting publication.
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Recommended repositories listed at http://www.springernature.com/gp/group/data-policy/repositories
** Types of deposit places: Repository; Journal
** Policy has instructions for where in manuscript to cite data?: Yes: Reference list
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2018-07-22T21:42:16Z

Jgautier: /* B */

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html Author Guidelines]
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Figshare
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html Author Guidelines]
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy URL(s): [http://www.int-res.com/journals/guidelines-for-authors/manuscript-formatting-requirements-and-preparation-tips/]
** Policy text: Sequence data: Full sequence information is required when molecular methods are used. The sequences of novel primers must be given. Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained.---Ocean acidification data reporting: When presenting methods and results reporting ocean acidification the 'Guide to best practices for ocean acidification research and data reporting' must be followed. Specifics for reporting ocean acidification data in scientific journals are outlined in Annex 1 of the 2015 addendum.---Unpublished results and submitted articles should be cited as: author's name unpub. data (e.g. N. Smith unpubl. data) in the text only.
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: Some data: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL, GenBank, DDBJ
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy URL(s): [http://www.biomedcentral.com/getpublished/editorial-policies#availability+of+data+and+materials]
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: All raw data supporting publication.
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Recommended repositories listed at http://www.springernature.com/gp/group/data-policy/repositories
** Types of deposit places: Repository; Journal
** Policy has instructions for where in manuscript to cite data?: Yes: Reference list
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2018-07-22T20:59:54Z

Jgautier: /* A */ Added policy info for Aquatic Microbial Ecology journal.

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html Author Guidelines]
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Figshare
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html Author Guidelines]
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy URL(s): [http://www.int-res.com/journals/guidelines-for-authors/manuscript-formatting-requirements-and-preparation-tips/]
** Policy text: Sequence data: Full sequence information is required when molecular methods are used. The sequences of novel primers must be given. Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained.---Ocean acidification data reporting: When presenting methods and results reporting ocean acidification the 'Guide to best practices for ocean acidification research and data reporting' must be followed. Specifics for reporting ocean acidification data in scientific journals are outlined in Annex 1 of the 2015 addendum.---Unpublished results and submitted articles should be cited as: author's name unpub. data (e.g. N. Smith unpubl. data) in the text only.
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: Some data: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL, GenBank, DDBJ
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2017-07-25T15:14:28Z

Jgautier: /* A */

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html Author Guidelines]
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Figshare
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html Author Guidelines]
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Lists maintained by others

2017-04-17T16:03:21Z

Jgautier: /* A */ Updated link to LIS journals "Author Agreements" report

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

----
{| align="right"
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* This is a list of OA-related lists hosted and maintained by others, not by the Open Access Directory.

* Related lists on OAD: [[Wikis about OA]].

* Alphabetical by list title.

== A ==

* [http://repinf.pbwiki.com/Copyright-and-licensing Author addenda]. At the [http://repinf.pbwiki.com/ International Repositories Infrastructure wiki].
** ''Also see'' the OAD list of [[Author addenda]].

* '''Agreements'''
** [http://hdl.handle.net/10150/105292 Author Agreements] for LIS journals. From [http://dlist.sir.arizona.edu/ dLIST].
** [http://www.oclc.org/programs/ourwork/collectivecoll/massdigresourcelist.htm Public/Private Mass Digitization Agreements]. From [http://www.oclc.org/ OCLC].
** [http://ejournals.ebsco.com/ejournals/license.asp Publishers' license agreements]. Maintained by [http://www2.ebsco.com/en-us/Pages/index.aspx EBSCO].

== B ==

* '''Bibliographies'''
** [http://en.wikipedia.org/wiki/Open_access#Bibliography_of_empirical_studies_on_open_access Bibliography of empirical studies on open access]. A section within the Wikipedia article on [http://en.wikipedia.org/wiki/Open_access open access].
** [http://opcit.eprints.org/oacitation-biblio.html The effect of open access and downloads ('hits') on citation impact: a bibliography of studies]. Maintained by Steve Hitchcock.
** [http://www.escholarlypub.com/oab/oab.htm Open Access Bibliography], ARL 2005. By Charles W. Bailey, Jr. On July 21, 2008, this work moved to OAD as the [http://oad.simmons.edu/oadwiki/Bibliography_of_open_access Bibliography of open access].
**''Scholarly Electronic Publishing Bibliography''. Maintained by Charles W. Bailey, Jr. Here are the sections most relevant to OA:
*** [http://www.digital-scholarship.org/sepb/models.htm 7. New Publishing Models]
*** [http://www.digital-scholarship.org/sepb/techrep.htm 9. Repositories, E-Prints, and OAI]
** [http://digital-scholarship.org/oajb/oajb.html Open Access Journals Bibliography]. Maintained by Charles W. Bailey, Jr.
** [http://digital-scholarship.org/tsp/transforming.htm Transforming Scholarly Publishing through Open Access: A Bibliography]. From Charles W. Bailey, Jr. First released September 2010.
** [http://www.unesco.org/new/fileadmin/MULTIMEDIA/HQ/CI/pdf/Bibliography%20OA%20LAC%20-%20Nov%202011.pdf Bibliography on open access initiatives in Latin America and the Caribbean] A section within [http://www.unesco.org/new/en/communication-and-information/portals-and-platforms/goap/access-by-region/latin-america-and-the-caribbean/ UNESCO-Global Open Access Portal-Latin America and the Caribbean]

* '''Books''' (not individual OA books, but lists of OA books and lists of collections of OA books)
** [http://www.freebookcentre.net/ Free Book Centre]. OA science books.
** [http://www.freeliterature.org/ free literature]. Includes a very large list of collections of OA books.
** [http://www.freetechbooks.com/ Free Tech Books]. Books in computer science and engineering.
** [http://onlinebooks.library.upenn.edu/ The Online Books Page]. From John Mark Ockerbloom.
** [http://www.openlibrary.org/ Open Library]. From the [http://www.opencontentalliance.org/ Open Content Alliance].
** [http://www.planetebook.com/ Planet eBook]. From Richard Crocker.
** [http://www.gutenberg.org/ Project Gutenberg]. Public-domain books of all kinds.
** ''Also see'' the OAD lists of [[Publishers of OA books]] and [[OA book business models]].
** ''Also see'' Textbooks below.

== C ==

* '''Calls'''
** Calls for papers. See the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.cfp tag library for the "oa.cfp" tag] from the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project].
** Calls for tenders (grant proposals). See the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.cft tag library for the "oa.cft" tag] from the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project].

* [http://scholcomm.columbia.edu/campus-based-publishing-partnerships Campus-Based Publishing Partnerships]. From the [http://www.columbia.edu/cu/lweb/ Columbia University Libraries].

* '''Case studies''' (not individual case studies but lists of case studies)
** [http://www.arl.org/sparc/partnering/cases/ Case studies of campus-based publishing partnerships]. From [http://www.arl.org/sparc/index.shtml SPARC].
** [http://wiki.creativecommons.org/Case_Studies Case studies of projects using CC licenses]. From [http://creativecommons.org/ Creative Commons].
** [http://www.biomedcentral.com/info/about/openaccessfund Open access and central funds]. From [http://www.biomedcentral.com/ BioMed Central]. Case studies of universities with funds to pay publication fees at fee-based OA journals.
** [http://www.rsp.ac.uk/repos/cases Repository case studies]. From the [http://www.rsp.ac.uk/index Repositories Support Project].
** ''Also see'' the [http://oad.simmons.edu/oadwiki/OATP_tags#Many_user-defined_tags "oa.case..." tag libraries] from the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project].

* [http://www.ckan.net/ Comprehensive Knowledge Archive Network] (CKAN). From the [http://www.okfn.org/ Open Knowledge Foundation]. "A registry of open knowledge packages and projects (and a few closed ones). CKAN is the place to search for open knowledge resources as well as register your own."

== D ==

* [http://datacite.org/repolist Data repositories]. From DataCite, the British Library, BioMed Central, and the Digital Curation Centre.

* '''Developing country initiatives''' (not individual initiatives but lists of initiatives)
** [http://www.alpsp.org/ngen_public/default.asp?id=372&groupid=195&groupname=Information+and+Resources Developing Country Initiatives]. From [http://www.alpsp.org/ ALPSP]. (No longer maintained?)
** [http://www.library.yale.edu/~llicense/develop.shtml Developing Nations Initiatives]. Maintained by Ann Okerson.
** [http://www.opensciencedirectory.net/ Open Science Directory]. Maintained by [http://www.epnet.com/ EBSCO] and [http://www.uhasselt.be/english/Default.asp Hasselt University].

== F ==

* [http://highwire.stanford.edu/lists/freeart.dtl Free Online Full-text Articles]. Limited to journals published online with the assistance of HighWire Press. Maintained by Highwire Press, Stanford University.

* '''Funding agencies willing to pay publication fees at fee-based OA journals''' (not individual funders but lists of funders)
** [http://www.biomedcentral.com/info/about/apcfaq#grants Funding agencies allowing direct use of their grants to cover article-processing charges]. Maintained by [http://www.biomedcentral.com/home/ BioMed Central].

* '''Funding agencies with OA policies''' (not individual funders but lists of funders)
** [http://www.sherpa.ac.uk/juliet/ Juliet], a database of funder policies from [http://www.sherpa.ac.uk/ SHERPA].
** [http://www.accesoabierto.net/politicas/ MELIBEA], a list of funder policies from Spain's [http://www.iata.csic.es/ Instituto de Agroquímica y Tecnología de Alimentos] (IATA) within the [http://www.csic.es/ Consejo Superior de Investigaciones Científicas] (CSIC). MELIBEA gives each policy a score based on its provisions. Also includes ''university'' OA policies.
** [http://www.eprints.org/openaccess/policysignup/ ROARMAP], a list of funder policies from [http://www.eprints.org/ EPrints]. Also includes ''university'' OA policies.
** [http://www.biomedcentral.com/info/authors/funderpolicies Summary of funding agency policies on open access], a comparative table of funder policies from [http://www.biomedcentral.com/ BioMed Central].

== G ==

* [http://www.sherpa.ac.uk/glossary.html Glossary of Open Access Abbreviations, Acronyms and Terms]. Maintained by [http://www.sherpa.ac.uk/ SHERPA].
** ''Also see'' the OAD list of [[Acronyms|Acronyms about OA]].

* [http://cyber.law.harvard.edu/hoap/Good_practices_for_university_open-access_policies Good practices for university open-access policies]. By Stuart Shieber and Peter Suber. Version 1.0 launched October 17, 2012.

== J ==

* [http://www.pubmedcentral.nih.gov/fprender.fcgi?cmd=full_view Journals participating in PubMed Central]. Maintained by the US [http://www.nih.gov/ National Institutes of Health] (NIH).

* [http://publicaccess.nih.gov/submit_process_journals.htm Journals That Submit ''All'' Final Published Articles to PubMed Central]. Maintained by the US [http://www.nih.gov/ National Institutes of Health] (NIH).

== O ==

* '''OA in different countries'''
** [http://www.openaire.eu/en/contact-us/lo National Open Access Desks]. From [http://www.openaire.eu/ OpenAIRE].
** [http://www.driver-support.eu/pmwiki/index.php?n=Main.EuropeanUnion OA in the European Union]. From the [http://www.driver-support.eu/pmwiki/index.php DRIVER Wiki]. Links to separate pages on 27 countries.
** [http://www.driver-support.eu/pmwiki/index.php?n=Main.NonEU OA in Non-EU Europe]. From the [http://www.driver-support.eu/pmwiki/index.php DRIVER Wiki]. Links to separate pages on 7 countries.
** [http://www.driver-support.eu/pmwiki/index.php?n=Main.RestOfWorld OA outside Europe]. From the [http://www.driver-support.eu/pmwiki/index.php DRIVER Wiki]. Links to separate pages on 11 countries.
** [http://www.taxpayeraccess.org/issues/access/access_resources/worldwide-momentum-for-public-access-to-publ.shtml Worldwide momentum for public access to publicly funded research]. From the [http://www.taxpayeraccess.org Alliance for Taxpayer Access]. Apparently not updated since 2006.

* '''OA in different fields'''
** [http://open-access.net/de_en/open_access_in_individual_disciplines/ OA in individual disciplines]. From the [http://www.open-access.net/ Informationsplattform Open Access]. Links to separate pages on 15 fields.

* [http://www.openarchives.org/service/listproviders.html OAI Service Providers]. Maintained by the [http://www.openarchives.org/ Open Archives Initiative]. For OAI data providers, see ''Open access repositories'' (below).

* [http://www.oaklist.qut.edu.au/ OAKList]. An Australian database on publisher policies on copyright and self-archiving. Maintained by [http://www.oaklaw.qut.edu.au/ The Open Access to Knowledge (OAK) Law Project]. The OAKList is fully interoperable with the Project SHERPA List (see below).

* [http://heybryan.org/search.html Online databases]. A small list.

* '''Open access journals''' (lists covering all fields)
** [http://rzblx1.uni-regensburg.de/ezeit/index.phtml?bibid=AAAAA&colors=7&lang=en Die Elektronische Zeitschriftenbibliothek (English version)] (EZB)
** [http://www.doaj.org/ Directory of Open Access Journals] (DOAJ). Limited to peer-reviewed journals.
** [http://jcross.jissen.ac.jp/atoz/index.html?b_type=AtoZ Directory of Open Access Journals in Japan] (DOAJJ). Not limited to peer-reviewed journals.
** [http://www.his.se/templates/vanligwebbsida1.aspx?id=20709 Jan Szczepanski's lists of open access journals]. Not limited to peer-reviewed journals. Also [http://www.scribd.com/doc/13205305/Free-Open-Access-Journals here].
** [http://www.scribd.com/doc/13205305/Free-Open-Access-Journals Jan Sczcepanski's working list].
** [http://en.wikipedia.org/wiki/List_of_open-access_journals List of open access journals]. From Wikipedia.
** [http://livre.cnen.gov.br/Default1024.asp LivRe]
** [http://sfx.ntu.ac.uk/sfxlcl3/az?&param_lang_save=eng&param_perform_save=locate&param_chinese_checkbox_save=0&param_services2filter_save=getFullTxt&param_current_view_save=table&param_jumpToPage_save=1&param_type_save=textSearch&param_textSearchType_save=exactMatch&param_textSearchType_value=exactMatch&param_vendor_active=1&param_vendor_value=110976638852340&param_locate_category_active=1 Nottingham Trent University list of Free E-Journals]. Apparently not limited to peer-reviewed journals.
** [http://en.wikipedia.org/wiki/Category:Open_access_journals OA journals with individual pages in Wikipedia]

** [http://www.library.unr.edu/ejournals/free.aspx University of Nevada Collection of Free Electronic Journals]

* '''Open access journals''' (lists for individual fields)
** [http://ancientworldonline.blogspot.com/2009/10/alphabetical-list-of-open-access.html Open Access Journals in Ancient Studies]. From Charles Ellwood Jones.
** [http://www.wikiarc.org/links OA journals in archaeology]. From [http://www.wikiarc.org/Home WikiArc].
** [http://www.abc.chemistry.bsu.by/current/fulltext.htm Free Full-Text Journals in Chemistry]. Maintained by Alexander Ragoisha.
** [http://aera-cr.asu.edu/ejournals/ American Educational Research SIG list of OA journals in education]. Maintained by Tirupalavanam G. Ganesh.
** [http://www.veletsianos.com/2009/08/09/open-access-educational-technology-journals/ OA journals in educational technology]. From George Veletsianos.
** [http://www.jurn.org/directory/ JURN Directory]. OA journals in the humanities. From [http://www.jurn.org/ JURN].
** [http://paleopolis.rediris.es/geosciences/index.html OA journals in geoscience].
** [http://freemedicaljournals.com/ Free Medical Journals]. From [http://www.amedeo.com/ Amedeo].
** [http://ht.ly/465f5 Open Access Journals in Middle Eastern Studies]

* '''Open access repositories''' (the major lists)
** [http://www.opendoar.org/ Directory of Open Access Repositories] (OpenDOAR).
** [http://archives.eprints.org/ Registry of Open Access Repositories] (ROAR).

* [http://wiki.okfn.org/Open_Data_Business Open data businesses]. "Businesses making a good living with open data." From the [http://www.okfn.org/ Open Knowledge Foundation].

* '''Open data policies''' (not individual OD policies but lists of OD policies)
** [http://www.codata.org/resources/databases/data_access/policies.html Scientific Data Policy Statements]. From [http://www.codata.org/index.html CODATA].

* '''Open educational resources''' (not individual OER but lists of OER).
** [http://www.academicroom.com/ Academic Room].
** [http://free.ed.gov/ Federal Resources for Educational Excellence] (FREE). From the U.S. [http://www.ed.gov/ Department of Education].
** [http://www.oercommons.org/ OER Commons]. From the [http://www.iskme.org/ Institute for the Study of Knowledge Management in Education].
** [https://spreadsheets.google.com/ccc?key=0AlQEyzXyEJfRdGFzZjU0U0NCV0dMd0E2YnNWbW5HdVE&hl=en#gid=0 OER Matrix]. A Google spreadsheet for community updating. From Tom Caswell.
** [http://oerus.wikispaces.com/page/edit/home?responseToken=026a04531c0930a29bf8b16c21ad2cf46 OER Projects at English-Speaking Universities]. From Jared Stein. ([http://flexknowlogy.learningfield.org/2009/06/22/help-list-university-based-oer-projects/ Background].)
** [http://www.onlinecollegeclasses.com/ Online College Classes].
** [http://www.opencourselibrary.org/ Open Course Library]. Developed by [http://sbctc.edu/ Washington State Colleges] and funded by the Bill & Melinda Gates Foundation and the Washington State Legislature.
** [http://wiki.creativecommons.org/ODEPO Open Database of Educational Projects and Organizations] (ODEPO). From [http://creativecommons.org/ Creative Commons].
** [http://grou.ps/oercenter/ Open Educational Resources Center for California]. From [http://www.foothill.fhda.edu/ Foothill College].
** [http://openeducation.developmentgateway.org/ Open Educational Resources]. From the [http://www.dgfoundation.org/ Development Gateway Foundation].
** [http://www.archive.org/details/education Open Educational Resources]. From the [http://www.archive.org/ Internet Archive]. Contains videos on lectures from many disciplines.
** [http://www.online-college-classes.com/ Online College Courses].
** [http://oerwiki.iiep-unesco.org/index.php?title=Main_Page Open Educational Resources]. From [http://www.unesco.org/ UNESCO].
** [http://wirelessu.org/ WirelessU].
** ''Also see'' the OAD [http://oad.simmons.edu/oadwiki/Disciplinary_repositories#Education_2_.28OER.29 list of OER repositories].

* [http://licenses.opendefinition.org/#all-licenses Open licenses]. Part of the [http://licenses.opendefinition.org/# Open Licenses Service] from the [http://www.okfn.org/ Open Knowledge Foundation].

* [http://wiki.okfn.org/openservices Open Services]. Services satisfying the [http://opendefinition.org/ossd open software service definition]. From the [http://www.okfn.org/ Open Knowledge Foundation].

== P ==

* '''Publication fees at fee-based OA journals''' (not individual fees but lists of fees)
** [http://www.biomedcentral.com/info/authors/apccomparison/ Comparison of BioMed Central's Article Processing Charges with those of other publishers]. From [http://www.biomedcentral.com/ BioMed Central].

* '''Publisher mergers''' (not individual mergers but lists of mergers)
** [http://www.niulib.niu.edu/publishers/ Publisher mergers and acquisitions]. Maintained by Mary Munroe for the Association of Research Libraries [http://www.arl.org/ (ARL)] and the Information Access Alliance [http://www.informationaccess.org/ (IAA)].
** [http://www.lib.berkeley.edu/scholarlycommunication/publisher_mergers.html Publisher mergers]. Maintained by the University of California - Berkeley. Last updated 10/30/08.

* '''Publisher policies on self-archiving and copyright''' (not individual policies but lists of policies)
** [http://www.oaklist.qut.edu.au/ Australian journal policies] (OAKlist). From the [http://www.oaklaw.qut.edu.au/ OAK Law Project].
** [http://romeo.eprints.org/publishers.html Journal Policies - List of Publishers]. From [http://www.eprints.org/ EPrints].
** [http://www.wellcome.ac.uk/About-us/Policy/Spotlight-issues/Open-access/Guides-and-FAQ/wtd041835.htm Journals frequently used by Wellcome Trust grantholders: summary of publisher open access policies]. From the [http://www.wellcome.ac.uk/ Wellcome Trust].
** [http://www.sherpa.ac.uk/romeo.php Publisher copyright policies & self-archiving] (RoMEO). Maintained by [http://www.sherpa.ac.uk/ Project SHERPA].
** [http://www.sherpa.ac.uk/romeo/PDFandIR.html Publishers allowing the deposition of their published version/PDF in Institutional Repositories]. From [http://www.sherpa.ac.uk/ SHERPA].
** [http://www.accesoabierto.net/dulcinea/ Spanish journal policies] (Dulcinea). From the Universities of Barcelona and Valencia.
** ''Also see'' the OAD list, [[Publisher policies on NIH-funded authors]].

* [http://www.library.yale.edu/~llicense/ILLproject.html Publisher policies on inter-library loan of electronic content]. Maintained by the Interlibrary Loan Project at the [http://www.library.yale.edu/~llicense/ILLproject.html Yale University Library].

* [http://www.mlanet.org/resources/publish/sc_2010-prices.html Publishers who froze subscription prices for 2010]. Maintained by Ad Hoc Committee for Advocating Scholarly Communications at the [http://www.mlanet.org/ Medical Library Association].

* '''Publishers of OA books''' (not individual publishers but lists of publishers)
** [http://project.oapen.org/index.php/overview-of-oa-book-publishers Overview of OA Book Publishers]. From [http://project.oapen.org/ OAPEN].
** ''Also see'' the OAD list, [[Publishers of OA books]].

* '''Publishers with hybrid OA journal programs''' (not individual publishers but lists of publishers)
** [http://en.wikipedia.org/wiki/Hybrid_open_access_journal#Publishers_and_names Publishers offering the hybrid open access option in their journals]. Maintained at Wikipedia as part of the "Hybrid open access journal" entry.
** [http://www.sherpa.ac.uk/romeo/PaidOA.html Publishers with Paid Options for Open Access]. From [http://www.sherpa.ac.uk/ SHERPA].

* [http://www.pubmedcentral.nih.gov/about/openftlist.html PubMed Central Open Access Subset]. Maintained by [http://www.pubmedcentral.nih.gov/index.html PubMed Central]. All articles in PMC are gratis OA. This is the subset of articles which are libre OA.

== R ==

* [http://ictlogy.net/bibciter/reports/bibliographies.php?idb=20 Reader on Open Access for Development]. Maintained by [http://ismael.ictlogy.net Ismael Peña-López].

* [http://repinf.pbwiki.com/Repository-support-organisations Repository support organizations], organized by nation. At the [http://repinf.pbwiki.com/ International Repositories Infrastructure wiki].
** ''Also see'' the OAD list of [[Services to support repository managers]].

== S ==

* [http://web.archive.org/web/20020206160321/http://gwu.edu/~gprice/science.htm Science databases]. Maintained by Gary Price. Organized by field.

* [http://www.co-action.net/projects/OAsocieties Society publishers with OA journals]. An Excel spreadsheet under a CC-BY license. Maintained by Caroline Sutton and Peter Suber.

* '''Software for repositories''' (not individual software packages but lists of software packages)
** [http://repinf.pbwiki.com/Repository-software Repository software]. At the [http://repinf.pbwiki.com/ International Repositories Infrastructure wiki].

== T ==

* '''Textbooks''' (not individual OA textbooks, but lists of OA textbooks and lists of collections of OA textbooks)
** [http://www.openculture.com/free_textbooks Free Textbooks: A Meta Collection]. From the [http://www.openculture.com/ Open Culture] blog.
** [http://open.umn.edu/opentextbooks/ Open Textbook Library]
** ''Also see'' Books, above.

== U ==

* '''Universities with OA policies''' (not individual universities but lists of universities)
** [http://www.accesoabierto.net/politicas/ MELIBEA], a list of university policies from Spain's [http://www.iata.csic.es/ Instituto de Agroquímica y Tecnología de Alimentos] (IATA) within the [http://www.csic.es/ Consejo Superior de Investigaciones Científicas] (CSIC). MELIBEA gives each policy a score based on its provisions. Also includes ''funding agency'' OA policies.
** [http://www.eprints.org/openaccess/policysignup/ ROARMAP], a list of university policies from [http://www.eprints.org/ EPrints]. Also includes ''funding agency'' OA policies.

* '''University lectures''' (not individual lectures, but lists of lectures; free online audio and/or video)
** [http://academicearth.org/ Academic Earth]
** [http://forum-network.org/ Forum Network]. From the US [http://pbs.org/ Public Broadcasting Service] (PBS) and [http://npr.org/ National Public Radio] (NPR).
** [http://www.pitt.edu/~super1/ Supercourse]. In 26 languages. Mostly in public health.
** [http://videolectures.net/ VideoLectures.net].

* '''University copyright policies''' (not individual policies, but lists of policies)
** [http://opened.creativecommons.org/UCOP University Copyright Ownership Policies]. From the Creative Commons Open Education project. (A wiki-like format allows users to add new policies.)

Journal open-data policies

2017-03-20T21:35:31Z

Jgautier: /* A */

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: Figshare
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2017-03-20T13:56:39Z

Jgautier: Updated and expanded info for African Journal of Ecology and Animal Conservation

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy URL(s): http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028/homepage/ForAuthors.html
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.
** Policy requests or requires authors to share data for publication: Requests
** Which data does policy refer to?: Doesn't specify
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: NA
** Types of deposit places: Journal; Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy URL(s): http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1469-1795/homepage/ForAuthors.html
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Policy requests or requires authors to share data for publication: Requires
** Which data does policy refer to?: DNA sequence data
** Policy has instructions for where to deposit shared data?: Yes
** Names of deposit places: EMBL/GenBank/DDBJ nucleotide sequence databases
** Types of deposit places: Repository
** Policy has instructions for where in manuscript to cite data?: No
** Peer review of data encouraged/required?: No
** Terms of access encouraged/required?: No
** Date of Policy: NA

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2017-03-20T13:33:37Z

Jgautier: /* A */

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365-2028 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.

* [http://www.wiley.com/bw/journal.asp?ref=1367-9430&site=1 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Type of data: DNA sequences
** Repository: EMBL, GenBank, DDBJ

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2017-03-20T13:31:52Z

Jgautier: Updated link to African Journal of Ecology

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1365]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.

* [http://www.wiley.com/bw/journal.asp?ref=1367-9430&site=1 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Type of data: DNA sequences
** Repository: EMBL, GenBank, DDBJ

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2017-02-27T03:57:27Z

Jgautier: Just testing editing access and alphabetizing two entries.

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

----

{| align="right"
| __TOC__
|}

== A ==

* [http://www.wiley.com/bw/submit.asp?ref=0141-6707&site=1 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.

* [http://www.wiley.com/bw/journal.asp?ref=1367-9430&site=1 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Type of data: DNA sequences
** Repository: EMBL, GenBank, DDBJ

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.

Journal open-data policies

2017-02-14T21:29:23Z

Jgautier:

[[File:oad2.jpeg|60px]] This list is part of the [http://oad.simmons.edu Open Access Directory].

'''This list is still under development. Every part of it may change before the official launch, including its title, URL, and method of organization.'''

* This is a list of journals with policies encouraging or requiring authors to provide open data for their published articles.

* When possible, please annotate each journal with its URL, its publisher, its ISSN, and the URL of its data policy. When possible, please annotate the data policies in the following ways:
** When was the policy adopted and last revised?
** Does it apply to some kinds of data and not other kinds? If so, which kinds?
** Does it ''require'' (as opposed to encourage, request, invite, or accommodate) open data? If the language is vague or ambiguous, then quote it.
** Does it specify a data repository? If so, which one(s)?
** Does it specify an open license or licensing terms? If so, which license or terms?

* For real-time news about journal open-data policies, including some not yet reflected here, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.policies.journals.data oa.policies.journals.data] tag of the [http://cyber.law.harvard.edu/hoap/Open_Access_Tracking_Project Open Access Tracking Project]. For a wider range of open-data news, follow the [http://tagteam.harvard.edu/hubs/oatp/tag/oa.data oa.data] tag.

* Alphabetical by journal title.

[[Category:Lists under development]] [[Category:Lists about publishers]] [[Category:Lists about journals]] [[Category:Lists about policies]] [[Category:Lists about data]]

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== A ==

* [http://www.wiley.com/bw/submit.asp?ref=0141-6707&site=1 African Journal of Ecology]
** Publisher: Wiley Blackwell
** ISSN: 0141-6707
** Policy text: Data that is integral to the paper must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Any restriction on the availability of this data must be disclosed at the time of submission.

* [http://www.wiley.com/bw/journal.asp?ref=1367-9430&site=1 Animal Conservation]
** Publisher: Wiley Blackwell
** ISSN: 1367-9430
** Policy text: DNA sequence data published in Animal Conservation should be deposited in one of the EMBL/GenBank/DDBJ nucleotide sequence databases, and accession numbers must be included in the final version of the manuscript. Genetic data from sources other than the manuscript must either be publicly available (with accession numbers or citations provided) or the authors must have appropriate permission to use unpublished data. Such permission should be described explicitly in the covering letter
** Type of data: DNA sequences
** Repository: EMBL, GenBank, DDBJ

* [http://www.int-res.com/journals/ame/ Aquatic Microbial Ecology]
** Publisher: Inter Research.
** ISSN: 0948-3055
** Policy text: Novel nucleotide or protein sequences must be deposited in the GenBank, EMBL or DDBJ databases and an accession number obtained
** Type of data: New nucleotide or protein sequences.
** Repository: EMBL, GenBank, DDBJ

== B ==

* [http://www.biomedcentral.com/bmcevolbiol/ BMC Evolutionary Biology]
** Publisher: Biomed Central (Note: guidelines across BMC journals are similar but not identical)
** ISSN: 1471-2148
** Policy text: Submission of a manuscript to BMC Evolutionary Biology implies that readily reproducible materials described in the manuscript, including all relevant raw data, will be freely available to any scientist wishing to use them for Non-commercial purposes. Nucleic acid sequences, protein sequences, and atomic coordinates should be deposited in an appropriate database in time for the accession number to be included in the published article. In computational studies where the sequence information is unacceptable for inclusion in databases because of lack of experimental validation, the sequences must be published as an additional file with the article… (continued)
** Type of data: All raw data supporting publication.

== C ==

==D==

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1472-4642/homepage/ForAuthors.html Diversity and Distributions]
** Publisher: Wiley Blackwell
** ISSN:1366-9516
** Policy text: It is a condition of publication that papers using new molecular sequences must place the sequences in an appropriate database (e.g. GenBank). Relevant accession numbers should be provided in the final manuscript. Accession numbers are required for all sequences used in analyses, including existing sequences in databases... appendices may be provided for important primary data, which needs to be included in the paper. If, however, these data are very extensive, or if they are of only indirect relevance to the paper, they will normally be made available in an electronic form through the Journal's web pages
** Types of data: All new molecular sequences.

==E==

* [http://www.elsevier.com/wps/find/journaldescription.cws_home/267/ Environmental and Experimental Botany]
** Publisher: Elsevier.
** ISSN: 0098-8472.
** Policy text: Accession numbers are unique identifiers in bioinformatics allocated to nucleotide and protein sequences to allow tracking of different versions of that sequence record and the associated sequence in a data repository [e.g., databases at the National Center for Biotechnical Information (NCBI) at the National Library of Medicine ('GenBank') and the Worldwide Protein Data Bank]…

* [http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1558-5646/homepage/ForAuthors.html Evolution]
** Publisher: Wiley Blackwell
** ISSN: 0014-3820
** Policy text: We require authors to submit DNA sequence data to GenBank and phylogenetic data to TreeBase
** Type of Data: DNA and phylogenetic data
** Associated repository: GenBank and/ or TreeBase

==I==

* [http://mts-isme.nature.com/cgi-bin/main.plex?form_type=display_auth_instructions ISME Journal]
** Publisher: Nature Publishing Group
** ISSN: 1751-7362
** Policy text: The ISME Journal will only review and publish manuscripts if the authors agree to make all data that cant be published in the journal itself (e.g. vel nucleotide sequences, structural data, or data from large-scale gene expression experiments) freely available in one of the public databases (see Submission to public databases below). Accession codes must be provided at the time a revised manuscript is returned to the Editorial Office. To avoid delays in publication of the manuscript, we encourage authors to deposit relevant data in public databases prior to submission. The authors may request that the data be stored in a confidential section of the database, in which they can request passwords from the database administrators, and these should be passed on to the Editorial Office to allow the editors and referees to anonymously access the information during the review process.
** Type of data: All underlying data of publication

==J==

* [http://www.nature.com/jes/index.html Journal of Exposure Science and Environmental Epidemiology]
** Publisher: Nature Publishing Group.
** ISSN: 1559-0631.
** Policy text: An inherent principle of publication is that others should be able to replicate and build upon the authors' published claims. Therefore, a condition of publication is that authors are required to make materials, data and associated protocols available in a publicly accessible database (as detailed in the sections below on this page). Where one does not exist, the information must be made available to referees at submission and to readers promptly on request. Any restrictions on materials availability or other relevant information must be disclosed in the manuscript‚ methods section and should include details of how materials and information may be obtained.

==O==

* [http://shop.elsevier.de/sixcms/media.php/820/ode_Instructions.pdf Organism Diversity and Evolution]
** Publisher: Elsevier
** ISSN:1439-6092
** Policy text: Molecular sequence data must be available from a public database (e.g. GenBank) when the corresponding paper is published. Whenever possible, sequences should be associable with publicly accessible morphological voucher specimens. Provide the respective accession and collection numbers. For phylogenetic data such as trees and matrices, the editors also sincerely recommend deposition in a public database (e.g. TreeBASE).
** Type of data: DNA and phylogenetic

==P==
* [http://www.plantcell.org/site/misc/ifora.xhtml The Plant Cell]
** Publisher: American Society of Plant Biologists
** ISSN: Print 1040-4651, Online 1532-298X
** Policy Text (Last Updated June 22, 2011): "Large-scale data sets must be made available for review at the time of submission and must be deposited in an accepted format to a permanent public repository with open access (e.g., GEO http://www.ncbi.nlm.nih.gov/geo or Array-Express http://www.ebi.ac.uk/arrayexpress)."
** Type of data: "Large-scale data sets (e.g., complete or draft genome sequences, genome annotations, genetic maps, EST data sets, transcript profiles, proteomic data sets, metabolic profiles, and next-gen sequencing data.")

* [http://www.plantphysiol.org/site/misc/ifora.xhtml Plant Physiology]
** Publisher: American Society of Plant Biologists
** ISSN: Print 0032-0889, Online 1532-2548
** Policy text (Last updated July 7, 2011): "At the time of publication, supplemental data must be placed in a permanent public repository if one is available, or if none is available, in Plant Physiology Online."
** Type of data: microarray data, next-generation genome sequencing, "This includes data from small RNA, mRNA, specialized RNA libraries, ChIP-seq, whole-genome re-sequencing or genotyping, whole-genome bisulfite sequencing, etc."

* [http://www.ansp.org/research/scipubs/authors.php Proceedings of the Academy of Natural Sciences of Philadelphia]
** Publisher: Academy of Natural Sciences of Philadelphia
** ISSN:0097-3157
** Policy text: Type specimens for new taxa must be deposited in a recognized repository prior to publication. Data to this effect must be included in the text.
** Type of data: Taxa

* [http://www.wiley.com/bw/submit.asp?ref=0800-0395&site=1 Polar Research]
** Publisher: Wiley Blackwell
** ISSN:0800-0395
** Policy text: "Data that are integral to the published article must be made available in such a way as to enable readers to replicate, verify and build upon the conclusions published in the paper. Restrictions on the availability of this data must be disclosed at the time of submission. We recommend that data for which public repositories are widely used, and are accessible to all, should be deposited in such a repository prior to publication. The appropriate linking details and identifier(s) should then be included in the publication and, where possible, in the repository, to facilitate linking between the journal article and the data. If such a repository does not exist, data should be included as supporting information to the published paper or authors should agree to make their data available upon reasonable request."
** Type of data: All underlying data

==S==

* [http://www.oxfordjournals.org/our_journals/sysbio/for_authors/ms_preparation.html Systematic Biology]
** Publisher: Oxford Univesity Press
** ISSN: 1063-5157
** Policy text: All nucleotide sequence data and alignments must be submitted to GenBank or EMBL before the paper can be published. In addition, all data matrices and resulting trees must be submitted to TreeBASE. GenBank and TreeBASE reference numbers should be provided in the final version of the paper.
** Type of data: Type of Data: DNA and phylogenetic data
** Repository: GenBank and/ or TreeBase

==T==

* [http://www.botanik.univie.ac.at/iapt/downloads/guidelines_authors.pdf Taxon]
** Publisher: International Association of Taxonomy.
** ISSN: 0040-0262
** Policy text: DNA or protein sequences must be deposited in public data repository.
** Type of data: DNA or Protein sequences.